Variant report

Variant	rs73779304
Chromosome Location	chr6:149643089-149643090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149642865..149645034-chr6:149649169..149650874,2	MCF-7	breast:
2	chr6:149564226..149566619-chr6:149641623..149643146,2	K562	blood:
3	chr6:149380086..149382702-chr6:149642964..149645035,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225924	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs17085985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17086054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34024129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35391071	1.00[EUR][1000 genomes]
rs35507156	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55763048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56126528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56390023	1.00[EUR][1000 genomes]
rs56836556	1.00[EUR][1000 genomes]
rs57234155	1.00[EUR][1000 genomes]
rs57240808	1.00[EUR][1000 genomes]
rs58467138	1.00[EUR][1000 genomes]
rs59090184	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs59181586	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59582367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60598581	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60923183	1.00[EUR][1000 genomes]
rs6926168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6926360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934491	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779305	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779307	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779311	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779313	1.00[EUR][1000 genomes]
rs73779314	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779330	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779333	1.00[EUR][1000 genomes]
rs73779345	1.00[EUR][1000 genomes]
rs73779346	1.00[EUR][1000 genomes]
rs73779354	1.00[EUR][1000 genomes]
rs73779366	1.00[EUR][1000 genomes]
rs73779373	1.00[EUR][1000 genomes]
rs73779376	1.00[EUR][1000 genomes]
rs7740647	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7760102	1.00[EUR][1000 genomes]
rs7761612	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs935386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015360	chr6:149609804-149649982	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1024106	chr6:149622349-149745053	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149639800-149643400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:149640000-149649400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:149640200-149645600	Weak transcription	Left Ventricle	heart
4	chr6:149640200-149655400	Weak transcription	Esophagus	oesophagus
5	chr6:149640200-149655600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:149640400-149645600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:149640400-149648600	Weak transcription	Right Ventricle	heart
8	chr6:149640600-149645800	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:149640600-149648600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr6:149640800-149643400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:149640800-149645400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:149640800-149645600	Weak transcription	Fetal Intestine Small	intestine
13	chr6:149640800-149649000	Weak transcription	Thymus	Thymus
14	chr6:149640800-149652800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:149640800-149653200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:149641000-149643200	Enhancers	Fetal Heart	heart
17	chr6:149641000-149648400	Weak transcription	Fetal Intestine Large	intestine
18	chr6:149641200-149643200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr6:149641200-149643400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr6:149641200-149644000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:149641200-149644200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr6:149641200-149647400	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr6:149641200-149648400	Weak transcription	Fetal Kidney	kidney
24	chr6:149641200-149649200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:149641200-149657400	Weak transcription	Aorta	Aorta
26	chr6:149641200-149681400	Weak transcription	Fetal Stomach	stomach
27	chr6:149641400-149643200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
28	chr6:149641400-149645600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr6:149641400-149655600	Weak transcription	Placenta	Placenta
30	chr6:149641600-149643800	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr6:149641600-149644000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr6:149641600-149644600	Enhancers	Brain Hippocampus Middle	brain
33	chr6:149641600-149644800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:149641600-149645200	Weak transcription	Stomach Smooth Muscle	stomach
35	chr6:149641600-149645600	Weak transcription	Brain Cingulate Gyrus	brain
36	chr6:149641600-149645600	Weak transcription	Stomach Mucosa	stomach
37	chr6:149641600-149646800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:149641600-149646800	Weak transcription	Pancreas	Pancrea
39	chr6:149641600-149647200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
40	chr6:149641600-149648400	Weak transcription	Duodenum Mucosa	Duodenum
41	chr6:149641600-149649400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr6:149641600-149652600	Weak transcription	Brain Germinal Matrix	brain
43	chr6:149641600-149656000	Weak transcription	Lung	lung
44	chr6:149641600-149660200	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr6:149641800-149644200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:149641800-149645200	Weak transcription	Adipose Nuclei	Adipose
47	chr6:149641800-149645400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
48	chr6:149641800-149646600	Enhancers	A549	lung
49	chr6:149641800-149647200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr6:149641800-149660200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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