Variant report

Variant	rs59181586
Chromosome Location	chr6:149660924-149660925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149659981..149662112-chr6:149664199..149665904,2	MCF-7	breast:
2	chr6:149649733..149652455-chr6:149658613..149661110,2	K562	blood:
3	chr6:149654628..149657508-chr6:149659280..149661788,2	MCF-7	breast:
4	chr6:149652416..149655199-chr6:149659324..149661368,2	K562	blood:
5	chr6:149636719..149639500-chr6:149659971..149661713,2	MCF-7	breast:
6	chr6:149658537..149661655-chr6:149675884..149678661,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000055208	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs17085985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17086054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34024129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35391071	1.00[EUR][1000 genomes]
rs35507156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55763048	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56126528	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56390023	1.00[EUR][1000 genomes]
rs56836556	1.00[EUR][1000 genomes]
rs57234155	1.00[EUR][1000 genomes]
rs57240808	1.00[EUR][1000 genomes]
rs58467138	1.00[EUR][1000 genomes]
rs59090184	0.87[AMR][1000 genomes]
rs59582367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60598581	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60923183	1.00[EUR][1000 genomes]
rs6926168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6926360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934491	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779304	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779305	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779307	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779311	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779312	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779313	1.00[EUR][1000 genomes]
rs73779314	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779330	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779333	1.00[EUR][1000 genomes]
rs73779345	1.00[EUR][1000 genomes]
rs73779346	1.00[EUR][1000 genomes]
rs73779354	1.00[EUR][1000 genomes]
rs73779366	1.00[EUR][1000 genomes]
rs73779373	1.00[EUR][1000 genomes]
rs73779376	1.00[EUR][1000 genomes]
rs7740647	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7760102	1.00[EUR][1000 genomes]
rs7761612	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs935386	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024106	chr6:149622349-149745053	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv522875	chr6:149643709-149762537	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149641200-149681400	Weak transcription	Fetal Stomach	stomach
2	chr6:149645000-149666400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:149649400-149689400	Weak transcription	Fetal Brain Female	brain
4	chr6:149654000-149674200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:149654600-149668600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:149656200-149670800	Weak transcription	Esophagus	oesophagus
7	chr6:149656800-149661800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:149656800-149681400	Weak transcription	Psoas Muscle	Psoas
9	chr6:149656800-149682400	Weak transcription	Lung	lung
10	chr6:149656800-149694400	Weak transcription	Placenta	Placenta
11	chr6:149657400-149663600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:149657400-149665800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:149657600-149663200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:149657800-149661400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr6:149657800-149673800	Weak transcription	Thymus	Thymus
16	chr6:149657800-149683800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:149657800-149691200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:149658000-149661200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:149658000-149661400	Weak transcription	HSMM	muscle
20	chr6:149658000-149662800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr6:149658000-149663200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:149658000-149663200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr6:149658000-149663400	Weak transcription	Small Intestine	intestine
24	chr6:149658000-149663800	Weak transcription	Aorta	Aorta
25	chr6:149658000-149663800	Weak transcription	Right Ventricle	heart
26	chr6:149658000-149673800	Weak transcription	Fetal Intestine Large	intestine
27	chr6:149658000-149673800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr6:149658000-149674000	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:149658000-149679000	Weak transcription	K562	blood
30	chr6:149658000-149680800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:149658000-149681400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:149658000-149695400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:149658200-149662400	Weak transcription	HSMMtube	muscle
34	chr6:149658200-149664800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:149658200-149691000	Weak transcription	NHDF-Ad	bronchial
36	chr6:149658600-149661200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr6:149658600-149664400	Weak transcription	Right Atrium	heart
38	chr6:149658800-149663600	Weak transcription	NHEK	skin
39	chr6:149658800-149666400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:149658800-149674000	Weak transcription	HepG2	liver
41	chr6:149658800-149692400	Weak transcription	Fetal Kidney	kidney
42	chr6:149659000-149661000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr6:149659000-149661000	Weak transcription	Osteobl	bone
44	chr6:149659000-149661200	Weak transcription	Primary T cells from cord blood	blood
45	chr6:149659000-149661400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:149659000-149662600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr6:149659000-149664800	Weak transcription	HUVEC	blood vessel
48	chr6:149659200-149661200	Weak transcription	A549	lung
49	chr6:149659200-149663400	Weak transcription	Dnd41	blood
50	chr6:149659200-149663600	Weak transcription	HMEC	breast

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