Variant report

Variant	rs73831803
Chromosome Location	chr3:55912084-55912085
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17055755	1.00[AMR][1000 genomes]
rs60497866	1.00[AMR][1000 genomes]
rs73831804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831805	1.00[AMR][1000 genomes]
rs73831806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831807	1.00[AMR][1000 genomes]
rs73834028	1.00[AMR][1000 genomes]
rs73834030	1.00[AMR][1000 genomes]
rs73834032	1.00[AMR][1000 genomes]
rs73834033	1.00[AMR][1000 genomes]
rs73834034	1.00[AMR][1000 genomes]
rs73834036	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv876815	chr3:55895409-55979964	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55893600-55923600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:55903800-55922000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:55909200-55913400	Weak transcription	A549	lung
4	chr3:55911000-55912800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:55912000-55912200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr3:55912000-55912200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:55912000-55912200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr3:55912000-55912200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr3:55912000-55912200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr3:55912000-55912400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr3:55912000-55912800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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