Variant report

Variant	rs73834032
Chromosome Location	chr3:55889756-55889757
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17055755	1.00[AMR][1000 genomes]
rs2231385	1.00[AMR][1000 genomes]
rs60497866	1.00[AMR][1000 genomes]
rs73831803	1.00[AMR][1000 genomes]
rs73831804	1.00[AMR][1000 genomes]
rs73831805	1.00[AMR][1000 genomes]
rs73831806	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73831807	1.00[AMR][1000 genomes]
rs73834028	1.00[AMR][1000 genomes]
rs73834030	1.00[AMR][1000 genomes]
rs73834033	1.00[AMR][1000 genomes]
rs73834034	1.00[AMR][1000 genomes]
rs73834036	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55887400-55890200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:55887400-55890400	Enhancers	Fetal Lung	lung
3	chr3:55887800-55889800	Enhancers	Fetal Stomach	stomach
4	chr3:55888800-55890400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:55888800-55890800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:55888800-55891800	Weak transcription	Brain Germinal Matrix	brain
7	chr3:55888800-55892400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:55888800-55892800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:55888800-55892800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:55888800-55892800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:55888800-55893200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr3:55888800-55893400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr3:55889000-55892600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:55889000-55893200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr3:55889000-55894000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr3:55889200-55890200	Enhancers	Fetal Heart	heart
17	chr3:55889200-55894600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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