Variant report

Variant	rs73831806
Chromosome Location	chr3:55920556-55920557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17055755	1.00[AMR][1000 genomes]
rs60497866	1.00[AMR][1000 genomes]
rs73831803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831805	1.00[AMR][1000 genomes]
rs73831807	1.00[AMR][1000 genomes]
rs73834028	1.00[AMR][1000 genomes]
rs73834030	1.00[AMR][1000 genomes]
rs73834032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73834033	1.00[AMR][1000 genomes]
rs73834034	1.00[AMR][1000 genomes]
rs73834036	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv876815	chr3:55895409-55979964	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55893600-55923600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:55903800-55922000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:55915400-55925800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:55916400-55921800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:55916400-55922200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:55917000-55922000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr3:55918000-55921600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:55918400-55921200	Enhancers	HMEC	breast
9	chr3:55918600-55921000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:55919000-55920600	Enhancers	NHLF	lung
11	chr3:55919400-55921200	Enhancers	HUVEC	blood vessel
12	chr3:55919600-55920800	Weak transcription	Placenta	Placenta
13	chr3:55919600-55921000	Enhancers	NHEK	skin
14	chr3:55919800-55922000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr3:55920000-55921800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:55920000-55922200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr3:55920000-55922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:55920000-55922400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr3:55920000-55931400	Weak transcription	Spleen	Spleen
20	chr3:55920200-55922200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr3:55920200-55922400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr3:55920200-55922400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:55920400-55920800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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