Variant report

Variant	rs73834033
Chromosome Location	chr3:55894732-55894733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:55893131..55895315-chr3:55900405..55902843,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17055755	1.00[AMR][1000 genomes]
rs60497866	1.00[AMR][1000 genomes]
rs6445753	1.00[EUR][1000 genomes]
rs72879146	1.00[EUR][1000 genomes]
rs73831803	1.00[AMR][1000 genomes]
rs73831804	1.00[AMR][1000 genomes]
rs73831805	1.00[AMR][1000 genomes]
rs73831806	1.00[AMR][1000 genomes]
rs73831807	1.00[AMR][1000 genomes]
rs73834028	1.00[AMR][1000 genomes]
rs73834030	1.00[AMR][1000 genomes]
rs73834032	1.00[AMR][1000 genomes]
rs73834034	1.00[AMR][1000 genomes]
rs73834036	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55891800-55895400	Enhancers	Fetal Lung	lung
2	chr3:55891800-55895400	Enhancers	Fetal Stomach	stomach
3	chr3:55891800-55896400	Enhancers	Brain Germinal Matrix	brain
4	chr3:55892400-55895000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:55892600-55894800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:55892600-55895400	Enhancers	Brain Cingulate Gyrus	brain
7	chr3:55892600-55895400	Enhancers	Fetal Kidney	kidney
8	chr3:55892600-55896000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr3:55892800-55894800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:55893000-55895000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr3:55893000-55908800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:55893200-55895200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:55893200-55895200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr3:55893400-55894800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr3:55893400-55895800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr3:55893400-55896000	Weak transcription	Fetal Heart	heart
17	chr3:55893600-55923600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr3:55893800-55895000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:55894000-55894800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr3:55894000-55895000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:55894000-55901400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr3:55894200-55894800	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr3:55894200-55895400	Enhancers	Fetal Brain Male	brain
24	chr3:55894200-55895800	Enhancers	Brain Substantia Nigra	brain
25	chr3:55894400-55894800	Enhancers	Fetal Brain Female	brain
26	chr3:55894400-55894800	Enhancers	Fetal Intestine Small	intestine
27	chr3:55894600-55895000	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr3:55894600-55895400	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr3:55894600-55901200	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links