Variant report

Variant	rs73834028
Chromosome Location	chr3:55862296-55862297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17055755	1.00[AMR][1000 genomes]
rs2231385	1.00[AMR][1000 genomes]
rs73831803	1.00[AMR][1000 genomes]
rs73831804	1.00[AMR][1000 genomes]
rs73831805	1.00[AMR][1000 genomes]
rs73831806	1.00[AMR][1000 genomes]
rs73831807	1.00[AMR][1000 genomes]
rs73834030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834032	1.00[AMR][1000 genomes]
rs73834033	1.00[AMR][1000 genomes]
rs73834034	1.00[AMR][1000 genomes]
rs73834036	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590361	chr3:55834871-55876104	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv3440427	chr3:55860016-55865704	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55861200-55863600	Weak transcription	Right Atrium	heart
2	chr3:55861400-55862400	Enhancers	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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