Variant report

Variant	rs73831807
Chromosome Location	chr3:55926122-55926123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17055755	1.00[AMR][1000 genomes]
rs60497866	1.00[AMR][1000 genomes]
rs73831803	1.00[AMR][1000 genomes]
rs73831804	1.00[AMR][1000 genomes]
rs73831805	1.00[AMR][1000 genomes]
rs73831806	1.00[AMR][1000 genomes]
rs73834028	1.00[AMR][1000 genomes]
rs73834030	1.00[AMR][1000 genomes]
rs73834032	1.00[AMR][1000 genomes]
rs73834033	1.00[AMR][1000 genomes]
rs73834034	1.00[AMR][1000 genomes]
rs73834036	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv876815	chr3:55895409-55979964	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55920000-55931400	Weak transcription	Spleen	Spleen
2	chr3:55921200-55927200	Weak transcription	HMEC	breast
3	chr3:55921600-55927000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:55923000-55929600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:55923400-55929000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:55923600-55929800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:55925000-55926400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:55925200-55927600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:55925400-55930200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:55925800-55926800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:55925800-55927800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:55925800-55928000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:55926000-55926200	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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