Variant report

Variant	rs73831805
Chromosome Location	chr3:55919452-55919453
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17055755	1.00[AMR][1000 genomes]
rs60497866	1.00[AMR][1000 genomes]
rs6445756	1.00[EUR][1000 genomes]
rs6774550	1.00[EUR][1000 genomes]
rs73831803	1.00[AMR][1000 genomes]
rs73831804	1.00[AMR][1000 genomes]
rs73831806	1.00[AMR][1000 genomes]
rs73831807	1.00[AMR][1000 genomes]
rs73834028	1.00[AMR][1000 genomes]
rs73834030	1.00[AMR][1000 genomes]
rs73834032	1.00[AMR][1000 genomes]
rs73834033	1.00[AMR][1000 genomes]
rs73834034	1.00[AMR][1000 genomes]
rs73834036	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv876815	chr3:55895409-55979964	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55893600-55923600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:55903800-55922000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:55915400-55925800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:55916400-55921800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:55916400-55922200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:55916800-55919600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:55917000-55922000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:55918000-55920200	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr3:55918000-55921600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:55918400-55920000	Enhancers	Hela-S3	cervix
11	chr3:55918400-55921200	Enhancers	HMEC	breast
12	chr3:55918600-55919600	Enhancers	Placenta	Placenta
13	chr3:55918600-55920000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:55918600-55920200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:55918600-55921000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:55919000-55920000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr3:55919000-55920600	Enhancers	NHLF	lung
18	chr3:55919200-55919600	Flanking Active TSS	NHEK	skin
19	chr3:55919200-55919800	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr3:55919200-55920000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:55919200-55920000	Enhancers	Fetal Lung	lung
22	chr3:55919200-55920000	Enhancers	Pancreas	Pancrea
23	chr3:55919200-55920200	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr3:55919200-55920400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr3:55919200-55920400	Enhancers	Muscle Satellite Cultured Cells	--
26	chr3:55919400-55919600	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr3:55919400-55920000	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr3:55919400-55920000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr3:55919400-55920000	Enhancers	Fetal Kidney	kidney
30	chr3:55919400-55920000	Enhancers	Fetal Stomach	stomach
31	chr3:55919400-55920200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr3:55919400-55921200	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links