Variant report

Variant	rs73832188
Chromosome Location	chr4:99184042-99184043
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	WRNIP1	chr4:99183799-99184083	GM12878	blood:	n/a	n/a
2	MYC	chr4:99184032-99184080	MCF10A-Er-Src	breast:	n/a	n/a
3	MXI1	chr4:99180419-99184597	SK-N-SH	brain:	n/a	n/a
4	MXI1	chr4:99180977-99184230	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:99181647..99184072-chr4:99579310..99582613,3	MCF-7	breast:
2	chr4:99183041..99184683-chr4:99227227..99228735,2	MCF-7	breast:
3	chr4:99183227..99185856-chr4:99306383..99308262,2	K562	blood:

Variant related genes	Relation type
ENSG00000214559	TF binding region
ENSG00000168785	Chromatin interaction
ENSG00000260641	Chromatin interaction

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs55634286	1.00[AMR][1000 genomes]
rs55699140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55913300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55942043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55950397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55987744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56022708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56030651	1.00[AMR][1000 genomes]
rs56032135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56038362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56075971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56081533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56110006	1.00[AMR][1000 genomes]
rs56128838	1.00[AMR][1000 genomes]
rs56199712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56262026	1.00[AMR][1000 genomes]
rs56743102	1.00[AMR][1000 genomes]
rs56813590	1.00[AMR][1000 genomes]
rs57012386	1.00[AMR][1000 genomes]
rs57375402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57678573	1.00[AMR][1000 genomes]
rs57911361	1.00[AMR][1000 genomes]
rs58507370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58579740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59399028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59643301	1.00[AMR][1000 genomes]
rs59911323	1.00[AMR][1000 genomes]
rs59980453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60107453	1.00[AMR][1000 genomes]
rs60148186	1.00[AMR][1000 genomes]
rs60218968	1.00[AMR][1000 genomes]
rs60460868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60467192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60473964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60502057	1.00[AMR][1000 genomes]
rs60551470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60883587	1.00[AMR][1000 genomes]
rs60969041	1.00[AMR][1000 genomes]
rs60998950	1.00[AMR][1000 genomes]
rs61537932	1.00[AMR][1000 genomes]
rs6814760	1.00[AMR][1000 genomes]
rs73832148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832175	1.00[AMR][1000 genomes]
rs73832177	1.00[AMR][1000 genomes]
rs73832178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832185	1.00[AMR][1000 genomes]
rs73832186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832190	1.00[AMR][1000 genomes]
rs73832194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832303	1.00[AMR][1000 genomes]
rs73832304	1.00[AMR][1000 genomes]
rs73832310	1.00[AMR][1000 genomes]
rs73832312	1.00[AMR][1000 genomes]
rs73832313	1.00[AMR][1000 genomes]
rs73832314	1.00[AMR][1000 genomes]
rs73832315	1.00[AMR][1000 genomes]
rs73834405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834415	1.00[AMR][1000 genomes]
rs73834418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834420	1.00[AMR][1000 genomes]
rs73834421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834430	1.00[AMR][1000 genomes]
rs73834432	1.00[AMR][1000 genomes]
rs73834433	1.00[AMR][1000 genomes]
rs73834440	1.00[AMR][1000 genomes]
rs73834441	1.00[AMR][1000 genomes]
rs73834442	1.00[AMR][1000 genomes]
rs73834446	1.00[AMR][1000 genomes]
rs73834447	1.00[AMR][1000 genomes]
rs73834448	1.00[AMR][1000 genomes]
rs73834449	1.00[AMR][1000 genomes]
rs73834450	1.00[AMR][1000 genomes]
rs73834451	1.00[AMR][1000 genomes]
rs73834457	1.00[AMR][1000 genomes]
rs73834458	1.00[AMR][1000 genomes]
rs73834459	1.00[AMR][1000 genomes]
rs73834460	1.00[AMR][1000 genomes]
rs73834462	1.00[AMR][1000 genomes]
rs73834463	1.00[AMR][1000 genomes]
rs73834464	1.00[AMR][1000 genomes]
rs73834465	1.00[AMR][1000 genomes]
rs73834469	1.00[AMR][1000 genomes]
rs73834472	1.00[AMR][1000 genomes]
rs73834473	1.00[AMR][1000 genomes]
rs73834477	1.00[AMR][1000 genomes]
rs73834483	1.00[AMR][1000 genomes]
rs73834484	1.00[AMR][1000 genomes]
rs73834486	1.00[AMR][1000 genomes]
rs73834488	1.00[AMR][1000 genomes]
rs73834491	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529623	chr4:98501338-99460166	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1001570	chr4:98976239-99239838	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1004616	chr4:99085875-99308901	Genic enhancers Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv2763801	chr4:99094892-99413853	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv879651	chr4:99105055-99441349	Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv879652	chr4:99125659-99303633	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv528127	chr4:99146436-99229839	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv879653	chr4:99152631-99260423	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99180800-99184200	Active TSS	HSMMtube	muscle
2	chr4:99181000-99184200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr4:99181000-99184200	Active TSS	HSMM	muscle
4	chr4:99181000-99184800	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr4:99181200-99184200	Active TSS	A549	lung
6	chr4:99181200-99184400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:99181400-99184400	Active TSS	K562	blood
8	chr4:99181400-99184800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:99181600-99184600	Active TSS	NHLF	lung
10	chr4:99181600-99185000	Active TSS	HMEC	breast
11	chr4:99181800-99184200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:99182800-99184200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
13	chr4:99183000-99184200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:99183000-99184400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr4:99183200-99184200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr4:99183200-99184200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:99183200-99184400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
18	chr4:99183200-99184600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr4:99183400-99184200	Flanking Active TSS	HUVEC	blood vessel
20	chr4:99183400-99184200	Flanking Active TSS	Osteobl	bone
21	chr4:99183400-99185200	Flanking Active TSS	Dnd41	blood
22	chr4:99183400-99194200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr4:99183600-99184200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr4:99183600-99184200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr4:99183600-99184200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr4:99183600-99184200	Flanking Active TSS	Brain Angular Gyrus	brain
27	chr4:99183600-99184200	Flanking Active TSS	Brain Anterior Caudate	brain
28	chr4:99183600-99184200	Flanking Active TSS	Brain Hippocampus Middle	brain
29	chr4:99183600-99184200	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr4:99183600-99184200	Flanking Active TSS	Hela-S3	cervix
31	chr4:99183600-99184400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr4:99183600-99184600	Flanking Active TSS	Fetal Brain Female	brain
33	chr4:99183600-99185000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr4:99183600-99185200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr4:99183600-99198200	Weak transcription	Ovary	ovary
36	chr4:99183600-99205400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr4:99183800-99184200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr4:99183800-99184200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr4:99183800-99184200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr4:99183800-99184200	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr4:99183800-99184200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr4:99183800-99184200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr4:99183800-99184200	Flanking Active TSS	Brain Cingulate Gyrus	brain
44	chr4:99183800-99184200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr4:99183800-99184200	Flanking Active TSS	Thymus	Thymus
46	chr4:99183800-99184200	Flanking Active TSS	NH-A	brain
47	chr4:99183800-99184400	Enhancers	Primary B cells from cord blood	blood
48	chr4:99183800-99184400	Flanking Active TSS	Fetal Brain Male	brain
49	chr4:99183800-99184400	Enhancers	Stomach Mucosa	stomach
50	chr4:99183800-99184400	Flanking Active TSS	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links