Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44608949..44610824-chr10:44662547..44664428,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs169162	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2146808	1.00[CEU][hapmap]
rs268288	0.85[EUR][1000 genomes]
rs268290	0.85[EUR][1000 genomes]
rs268291	0.85[EUR][1000 genomes]
rs268292	0.85[EUR][1000 genomes]
rs268295	0.85[EUR][1000 genomes]
rs268310	0.85[EUR][1000 genomes]
rs268315	0.82[AMR][1000 genomes]
rs268316	0.82[AMR][1000 genomes]
rs268318	0.82[AMR][1000 genomes]
rs268320	0.82[AMR][1000 genomes]
rs268324	0.82[AMR][1000 genomes]
rs2760672	1.00[CEU][hapmap]
rs702363	1.00[CEU][hapmap]
rs800316	1.00[CEU][hapmap]
rs800318	1.00[CEU][hapmap]
rs800320	1.00[CEU][hapmap]
rs808972	1.00[CEU][hapmap]
rs809601	1.00[CEU][hapmap]
rs900329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1043342	chr10:44650635-44682716	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44656600-44669400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:44656600-44673200	Weak transcription	Right Atrium	heart
3	chr10:44658000-44668400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:44660000-44663200	Weak transcription	Right Ventricle	heart
5	chr10:44660000-44663400	Weak transcription	HepG2	liver
6	chr10:44660400-44668200	Weak transcription	Left Ventricle	heart
7	chr10:44663000-44663200	Enhancers	Duodenum Mucosa	Duodenum
8	chr10:44663000-44663800	Enhancers	Fetal Heart	heart
9	chr10:44663000-44666200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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