Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1388977	0.83[AMR][1000 genomes]
rs169162	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17154976	0.83[AMR][1000 genomes]
rs268288	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs268290	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs268292	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs268295	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs268299	0.90[AFR][1000 genomes]
rs268300	0.90[AFR][1000 genomes]
rs268301	0.90[AFR][1000 genomes]
rs268306	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs268310	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs268315	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs268316	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs268318	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs268320	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs268324	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs268329	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs268330	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs746141	0.85[EUR][1000 genomes]
rs900329	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44598400-44601000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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