Variant report
| Variant | rs268310 |
|---|---|
| Chromosome Location | chr10:44610005-44610006 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:44608949..44610824-chr10:44662547..44664428,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1388977 | 0.83[AMR][1000 genomes] |
| rs169162 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs17154976 | 0.83[AMR][1000 genomes] |
| rs268288 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs268290 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs268291 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs268292 | 0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs268295 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs268299 | 0.88[AFR][1000 genomes] |
| rs268300 | 0.88[AFR][1000 genomes] |
| rs268301 | 0.88[AFR][1000 genomes] |
| rs268306 | 0.94[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs268315 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs268316 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs268318 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs268320 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs268324 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs268329 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs268330 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs746141 | 0.85[EUR][1000 genomes] |
| rs900329 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1038511 | chr10:44596885-44870030 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:44608200-44611400 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
