Variant report

Variant	rs268320
Chromosome Location	chr10:44558546-44558547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1388977	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs169162	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17154976	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17383514	0.90[EUR][1000 genomes]
rs268288	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs268290	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs268291	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs268292	0.86[EUR][1000 genomes]
rs268295	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs268306	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs268310	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs268315	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs268316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs268318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs268324	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs268329	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs268330	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs746141	0.82[AMR][1000 genomes]
rs900329	0.82[AMR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44553200-44560800	Weak transcription	Gastric	stomach
2	chr10:44553200-44561200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:44556000-44559000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:44556000-44559200	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:44556800-44559000	Weak transcription	Ovary	ovary
6	chr10:44556800-44559000	Weak transcription	Pancreas	Pancrea
7	chr10:44556800-44561400	Weak transcription	Fetal Kidney	kidney
8	chr10:44557800-44559800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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