Variant report

Variant	rs268318
Chromosome Location	chr10:44559086-44559087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1388977	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs169162	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17154976	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17383514	0.90[EUR][1000 genomes]
rs268288	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs268290	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs268291	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs268292	0.86[EUR][1000 genomes]
rs268295	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs268306	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs268310	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs268315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs268316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs268320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs268324	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs268329	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs268330	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs746141	0.82[AMR][1000 genomes]
rs900329	0.82[AMR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44553200-44560800	Weak transcription	Gastric	stomach
2	chr10:44553200-44561200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:44556000-44559200	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:44556800-44561400	Weak transcription	Fetal Kidney	kidney
5	chr10:44557800-44559800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:44558600-44561200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:44558800-44560800	Weak transcription	Esophagus	oesophagus
8	chr10:44558800-44562800	Enhancers	Fetal Stomach	stomach
9	chr10:44559000-44560800	Enhancers	Stomach Smooth Muscle	stomach
10	chr10:44559000-44561600	Enhancers	Pancreas	Pancrea
11	chr10:44559000-44562600	Enhancers	Ovary	ovary
12	chr10:44559000-44563200	Enhancers	Colon Smooth Muscle	Colon
13	chr10:44559000-44563400	Enhancers	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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