Variant report

Variant	rs7542906
Chromosome Location	chr1:213101719-213101720
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:213094798..213097426-chr1:213100540..213102922,3	K562	blood:
2	chr1:212964099..212966838-chr1:213100837..213103616,2	K562	blood:
3	chr1:212963009..212966838-chr1:213099480..213103616,4	K562	blood:
4	chr1:213100809..213102648-chr1:213104742..213106432,2	K562	blood:

Variant related genes	Relation type
ENSG00000203705	Chromatin interaction
ENSG00000117697	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10127459	1.00[ASN][1000 genomes]
rs10746436	1.00[ASN][1000 genomes]
rs10779594	1.00[ASN][1000 genomes]
rs10864003	1.00[ASN][1000 genomes]
rs10864019	1.00[ASN][1000 genomes]
rs11120033	1.00[ASN][1000 genomes]
rs12036735	1.00[ASN][1000 genomes]
rs1284800	1.00[ASN][1000 genomes]
rs1284864	1.00[ASN][1000 genomes]
rs1615680	1.00[ASN][1000 genomes]
rs1692178	1.00[ASN][1000 genomes]
rs1692179	1.00[ASN][1000 genomes]
rs1692180	1.00[ASN][1000 genomes]
rs17020044	1.00[ASN][1000 genomes]
rs17020046	1.00[ASN][1000 genomes]
rs1770777	1.00[ASN][1000 genomes]
rs1770778	1.00[ASN][1000 genomes]
rs1874419	1.00[ASN][1000 genomes]
rs2047289	1.00[ASN][1000 genomes]
rs2047293	1.00[ASN][1000 genomes]
rs2359324	1.00[ASN][1000 genomes]
rs2644545	1.00[ASN][1000 genomes]
rs2792558	1.00[ASN][1000 genomes]
rs2792560	1.00[ASN][1000 genomes]
rs2792561	1.00[ASN][1000 genomes]
rs35976699	1.00[ASN][1000 genomes]
rs41315581	1.00[ASN][1000 genomes]
rs4951649	1.00[ASN][1000 genomes]
rs59252582	1.00[ASN][1000 genomes]
rs6540768	1.00[ASN][1000 genomes]
rs6666362	1.00[ASN][1000 genomes]
rs6667161	1.00[ASN][1000 genomes]
rs6674933	1.00[ASN][1000 genomes]
rs6689134	1.00[ASN][1000 genomes]
rs6703612	1.00[ASN][1000 genomes]
rs7528119	1.00[ASN][1000 genomes]
rs7533932	1.00[ASN][1000 genomes]
rs963327	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008383	chr1:213025546-213114894	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213090600-213101800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:213099400-213101800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:213099600-213101800	Weak transcription	HSMMtube	muscle
4	chr1:213100000-213101800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr1:213100600-213102600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:213100600-213103000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr1:213101200-213102000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr1:213101200-213102200	Enhancers	H9 Cell Line	embryonic stem cell
9	chr1:213101200-213102200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr1:213101200-213102200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr1:213101200-213102600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr1:213101200-213102800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr1:213101200-213102800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr1:213101200-213102800	Enhancers	Fetal Lung	lung
15	chr1:213101200-213102800	Enhancers	Fetal Muscle Leg	muscle
16	chr1:213101200-213102800	Enhancers	Fetal Stomach	stomach
17	chr1:213101200-213103000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr1:213101200-213103000	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr1:213101400-213102000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr1:213101400-213102400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr1:213101400-213102400	Enhancers	Fetal Muscle Trunk	muscle
22	chr1:213101400-213102600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr1:213101400-213102600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr1:213101400-213102600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr1:213101400-213102800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr1:213101400-213102800	Enhancers	GM12878-XiMat	blood
27	chr1:213101400-213102800	Enhancers	HepG2	liver
28	chr1:213101600-213102000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr1:213101600-213102000	Active TSS	Stomach Smooth Muscle	stomach
30	chr1:213101600-213102200	Enhancers	Placenta Amnion	Placenta Amnion
31	chr1:213101600-213102600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr1:213101600-213102600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr1:213101600-213102600	Enhancers	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links