Variant report
| Variant | rs7560183 |
|---|---|
| Chromosome Location | chr2:142403763-142403764 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:142386784..142389689-chr2:142401427..142404139,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10177919 | 1.00[JPT][hapmap] |
| rs10177925 | 1.00[JPT][hapmap] |
| rs1347659 | 0.88[CHB][hapmap] |
| rs164978 | 1.00[JPT][hapmap] |
| rs164979 | 1.00[JPT][hapmap] |
| rs16846719 | 0.88[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap] |
| rs16846817 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs16846918 | 0.88[CHB][hapmap] |
| rs16846922 | 0.88[CHB][hapmap] |
| rs16846935 | 0.85[CHB][hapmap];0.82[JPT][hapmap] |
| rs16846937 | 0.86[CHB][hapmap] |
| rs354853 | 1.00[JPT][hapmap] |
| rs354856 | 1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap] |
| rs355558 | 0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs355559 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs355591 | 0.89[CHB][hapmap];0.85[JPT][hapmap] |
| rs41320547 | 0.88[CHB][hapmap] |
| rs58328208 | 0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6736591 | 1.00[CEU][hapmap];0.85[JPT][hapmap] |
| rs72980183 | 0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs7560557 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834393 | chr2:142256714-142431564 | Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | n/a |
| 2 | nsv583214 | chr2:142299923-142458316 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 3 | nsv1011019 | chr2:142314999-142430460 | Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 4 | nsv875244 | chr2:142336104-142421500 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 5 | nsv875245 | chr2:142336104-142421500 | Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 6 | nsv583234 | chr2:142376540-142404955 | Enhancers Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
