Variant report
| Variant | rs354856 |
|---|---|
| Chromosome Location | chr2:142433670-142433671 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:142432833..142434470-chr2:142438511..142441100,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10177919 | 0.86[CHB][hapmap];1.00[JPT][hapmap] |
| rs10177925 | 0.86[CHB][hapmap];1.00[JPT][hapmap] |
| rs1347659 | 1.00[CHB][hapmap] |
| rs1370330 | 0.86[CHB][hapmap];0.87[ASN][1000 genomes] |
| rs164978 | 0.86[CHB][hapmap];1.00[JPT][hapmap] |
| rs164979 | 0.86[CHB][hapmap];1.00[JPT][hapmap] |
| rs16846700 | 0.86[CHB][hapmap] |
| rs16846719 | 1.00[JPT][hapmap] |
| rs16846817 | 1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap] |
| rs16846884 | 0.85[CHB][hapmap];0.87[ASN][1000 genomes] |
| rs16846918 | 1.00[CHB][hapmap] |
| rs16846922 | 1.00[CHB][hapmap] |
| rs16846935 | 1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs16846937 | 1.00[CHB][hapmap] |
| rs16846962 | 0.86[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs16846974 | 0.86[CHB][hapmap] |
| rs354853 | 0.86[CHB][hapmap];1.00[JPT][hapmap] |
| rs355558 | 0.91[ASN][1000 genomes] |
| rs355559 | 0.89[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs355591 | 0.85[JPT][hapmap] |
| rs41320547 | 1.00[CHB][hapmap] |
| rs58328208 | 0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6736591 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap] |
| rs72980183 | 0.92[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs7560183 | 1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap] |
| rs7560557 | 1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv583214 | chr2:142299923-142458316 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 2 | nsv834394 | chr2:142430225-142593264 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
