Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10177919	1.00[CHB][hapmap]
rs10177925	1.00[CHB][hapmap]
rs11885120	0.85[CHB][hapmap]
rs1347659	0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1370330	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164978	1.00[CHB][hapmap]
rs164979	1.00[CHB][hapmap]
rs16846700	1.00[CHB][hapmap]
rs16846719	0.85[CHB][hapmap]
rs16846817	1.00[CHB][hapmap]
rs16846918	0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16846922	0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16846935	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16846937	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16846962	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16846974	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs354853	1.00[CHB][hapmap]
rs354856	0.85[CHB][hapmap]
rs355558	0.83[ASN][1000 genomes]
rs355559	0.83[ASN][1000 genomes]
rs355583	0.85[CHB][hapmap]
rs41320547	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs58328208	0.89[ASN][1000 genomes]
rs6736591	1.00[CHB][hapmap]
rs7560557	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142453000-142458600	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:142455200-142457200	Enhancers	Liver	Liver
3	chr2:142455600-142459400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr2:142455800-142459800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr2:142456000-142456600	Weak transcription	HUES48 Cell Line	embryonic stem cell

Quick Search: