Variant report

Variant	rs16846935
Chromosome Location	chr2:142469781-142469782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10177919	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap]
rs10177925	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs11885120	0.85[CHB][hapmap]
rs1347659	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1370330	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs164978	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs164979	1.00[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap]
rs16846700	1.00[CHB][hapmap]
rs16846719	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs16846817	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs16846884	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16846918	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.89[MKK][hapmap];0.85[TSI][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs16846922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16846925	0.85[MKK][hapmap];0.92[AFR][1000 genomes]
rs16846937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16846962	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16846974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs354853	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs354856	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs355558	0.85[ASN][1000 genomes]
rs355559	0.85[ASN][1000 genomes]
rs355583	0.85[CHB][hapmap]
rs41320547	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap]
rs58328208	0.83[ASN][1000 genomes]
rs6736591	1.00[CHB][hapmap]
rs7560183	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs7560557	1.00[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv433206	chr2:142469781-142486875	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142469400-142469800	Enhancers	Fetal Lung	lung
2	chr2:142469600-142471400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:142469600-142471600	Weak transcription	Adipose Nuclei	Adipose
4	chr2:142469600-142472000	Weak transcription	Liver	Liver

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