Variant report
| Variant | rs16846974 |
|---|---|
| Chromosome Location | chr2:142482659-142482660 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:142482564..142485203-chr2:142902168..142904224,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10177919 | 1.00[CHB][hapmap] |
| rs10177925 | 1.00[CHB][hapmap] |
| rs11885120 | 0.86[CHB][hapmap] |
| rs1347659 | 1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1370330 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs164978 | 1.00[CHB][hapmap] |
| rs164979 | 1.00[CHB][hapmap] |
| rs16846700 | 1.00[CHB][hapmap] |
| rs16846719 | 0.86[CHB][hapmap] |
| rs16846817 | 1.00[CHB][hapmap] |
| rs16846884 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs16846918 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs16846922 | 1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs16846935 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs16846937 | 1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs16846962 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs354853 | 1.00[CHB][hapmap] |
| rs354856 | 0.86[CHB][hapmap] |
| rs355583 | 0.86[CHB][hapmap] |
| rs41320547 | 0.86[CHB][hapmap];1.00[JPT][hapmap] |
| rs58328208 | 0.81[ASN][1000 genomes] |
| rs6736591 | 1.00[CHB][hapmap] |
| rs7560557 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834394 | chr2:142430225-142593264 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv433206 | chr2:142469781-142486875 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 3 | nsv530398 | chr2:142474842-142843839 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
