Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10177919	1.00[CHB][hapmap]
rs10177925	1.00[CHB][hapmap]
rs11885120	0.86[CHB][hapmap]
rs1347659	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1370330	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs164978	1.00[CHB][hapmap]
rs164979	1.00[CHB][hapmap]
rs16846700	1.00[CHB][hapmap]
rs16846719	0.86[CHB][hapmap]
rs16846817	1.00[CHB][hapmap]
rs16846884	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16846918	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16846922	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16846935	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16846937	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16846974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs354853	1.00[CHB][hapmap]
rs354856	0.86[CHB][hapmap]
rs355583	0.86[CHB][hapmap]
rs41320547	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs58328208	0.83[ASN][1000 genomes]
rs6736591	1.00[CHB][hapmap]
rs7560557	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv433206	chr2:142469781-142486875	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142475000-142476000	Enhancers	Fetal Stomach	stomach
2	chr2:142475400-142476000	Weak transcription	Colon Smooth Muscle	Colon
3	chr2:142475400-142476800	Enhancers	Rectal Smooth Muscle	rectum

Quick Search: