Variant report

Variant	rs16846719
Chromosome Location	chr2:142390429-142390430
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10177919	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10177925	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1370330	0.86[CHB][hapmap]
rs164978	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs164979	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs16846700	0.86[CHB][hapmap]
rs16846817	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs16846884	0.85[CHB][hapmap]
rs16846935	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs16846962	0.86[CHB][hapmap]
rs16846974	0.86[CHB][hapmap]
rs354853	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs354856	1.00[JPT][hapmap]
rs355576	0.88[CHB][hapmap]
rs355581	0.88[CHB][hapmap]
rs355591	0.85[JPT][hapmap]
rs6736591	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs7560183	0.88[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs7560557	0.86[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
2	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1011019	chr2:142314999-142430460	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv875244	chr2:142336104-142421500	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv875245	chr2:142336104-142421500	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv583234	chr2:142376540-142404955	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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