Variant report

Variant	rs7560557
Chromosome Location	chr2:142437151-142437152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142435826..142437412-chr2:142439074..142441235,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10177919	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.84[MKK][hapmap]
rs10177925	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11885120	0.86[CHB][hapmap]
rs1347659	0.86[CHB][hapmap];0.92[CHD][hapmap]
rs1370330	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs164978	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs164979	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs16846700	1.00[CHB][hapmap]
rs16846719	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs16846817	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs16846884	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs16846918	0.86[CHB][hapmap];0.92[CHD][hapmap];0.81[ASN][1000 genomes]
rs16846922	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs16846935	1.00[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs16846937	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs16846962	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs16846974	1.00[CHB][hapmap]
rs354853	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs354856	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs355558	0.93[ASN][1000 genomes]
rs355559	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs355583	0.86[CHB][hapmap]
rs355591	0.85[JPT][hapmap]
rs41320547	0.86[CHB][hapmap];0.92[CHD][hapmap]
rs58328208	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6736591	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs72980183	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7560183	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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