Variant report
| Variant | rs7583748 |
|---|---|
| Chromosome Location | chr2:142855291-142855292 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:142854531..142857434-chr2:142881321..142883882,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs13029758 | 0.88[EUR][1000 genomes] |
| rs13398962 | 1.00[MEX][hapmap] |
| rs1375605 | 0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1375608 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs1449483 | 0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1449488 | 0.80[EUR][1000 genomes] |
| rs1562704 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16848084 | 0.82[CHB][hapmap];1.00[JPT][hapmap] |
| rs17776027 | 0.86[EUR][1000 genomes] |
| rs17776043 | 0.86[EUR][1000 genomes] |
| rs2290142 | 0.80[EUR][1000 genomes] |
| rs4662397 | 0.80[EUR][1000 genomes] |
| rs4662398 | 0.80[EUR][1000 genomes] |
| rs6707007 | 0.82[EUR][1000 genomes] |
| rs6728101 | 0.83[EUR][1000 genomes] |
| rs72847083 | 0.98[EUR][1000 genomes] |
| rs72847089 | 0.98[EUR][1000 genomes] |
| rs72849805 | 0.98[EUR][1000 genomes] |
| rs72849811 | 0.98[EUR][1000 genomes] |
| rs72849830 | 1.00[EUR][1000 genomes] |
| rs72849836 | 1.00[EUR][1000 genomes] |
| rs72849851 | 1.00[EUR][1000 genomes] |
| rs72851456 | 1.00[EUR][1000 genomes] |
| rs72851466 | 1.00[EUR][1000 genomes] |
| rs72852610 | 0.91[EUR][1000 genomes] |
| rs72852633 | 0.84[EUR][1000 genomes] |
| rs72852654 | 0.86[EUR][1000 genomes] |
| rs72853692 | 0.98[EUR][1000 genomes] |
| rs72992499 | 0.90[ASN][1000 genomes] |
| rs72996320 | 0.94[ASN][1000 genomes] |
| rs7594671 | 0.86[EUR][1000 genomes] |
| rs895936 | 0.88[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv997274 | chr2:142760393-143599193 | Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv526107 | chr2:142768518-142884248 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv875253 | chr2:142805006-142855291 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv875254 | chr2:142833327-142931146 | Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 5 | nsv1006247 | chr2:142851056-143289465 | Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
