Variant report

Variant	rs7678123
Chromosome Location	chr4:81372405-81372406
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10027362	0.87[EUR][1000 genomes]
rs1027397	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1039052	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1039053	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10857164	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1390253	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1390255	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2867736	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34738400	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6814695	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7656243	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7683819	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7693928	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999334	chr4:81324288-81409040	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv537153	chr4:81324288-81409040	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81361600-81381000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:81367600-81375200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:81367800-81375200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:81370000-81375200	Weak transcription	Osteobl	bone
5	chr4:81370200-81375200	Weak transcription	NHDF-Ad	bronchial
6	chr4:81371600-81372600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr4:81372400-81374800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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