Variant report

Variant	rs1390253
Chromosome Location	chr4:81402258-81402259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10027362	0.86[ASN][1000 genomes]
rs1027397	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1039052	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1039053	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10857164	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11937407	0.84[ASN][1000 genomes]
rs1390252	0.85[ASN][1000 genomes]
rs1390255	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1495493	0.80[ASN][1000 genomes]
rs2132271	0.80[ASN][1000 genomes]
rs2172878	0.84[ASN][1000 genomes]
rs2867736	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34269363	0.84[ASN][1000 genomes]
rs34738400	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58593245	0.85[ASN][1000 genomes]
rs6534967	0.84[ASN][1000 genomes]
rs6814695	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6826104	0.82[ASN][1000 genomes]
rs6831485	0.82[ASN][1000 genomes]
rs6832233	0.82[ASN][1000 genomes]
rs6835442	0.84[ASN][1000 genomes]
rs7656243	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7660815	0.84[ASN][1000 genomes]
rs7678123	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7683819	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7693928	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999334	chr4:81324288-81409040	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv537153	chr4:81324288-81409040	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81397400-81406000	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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