Variant report

Variant	rs1390252
Chromosome Location	chr4:81405377-81405378
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1027397	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1039052	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1039053	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10857164	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11099253	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11731831	0.90[EUR][1000 genomes]
rs11937407	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11940032	0.87[EUR][1000 genomes]
rs11944437	0.83[EUR][1000 genomes]
rs11944925	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12650570	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13142845	0.81[ASN][1000 genomes]
rs1390253	0.85[ASN][1000 genomes]
rs1390255	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1495489	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1495493	0.81[ASN][1000 genomes]
rs1843563	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1874336	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1908550	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1971301	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2132267	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2132268	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2132269	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2132271	0.81[ASN][1000 genomes]
rs2172878	0.85[ASN][1000 genomes]
rs2867736	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs34269363	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34738400	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58593245	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6534967	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6814695	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6826104	0.84[ASN][1000 genomes]
rs6827369	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6831485	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6832233	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6835442	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7656243	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7660815	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7683819	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7685226	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7693928	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999334	chr4:81324288-81409040	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv537153	chr4:81324288-81409040	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv528410	chr4:81402774-81411380	Weak transcription Enhancers Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81397400-81406000	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links