Variant report

Variant	rs7656243
Chromosome Location	chr4:81386861-81386862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10027362	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1027397	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1039052	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1039053	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10857164	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1390252	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1390253	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1390255	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2867736	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34738400	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58593245	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6814695	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6826195	0.93[YRI][hapmap]
rs7678123	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7683819	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7693928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999334	chr4:81324288-81409040	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv537153	chr4:81324288-81409040	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81381400-81389200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:81382800-81392400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:81383400-81392000	Weak transcription	Fetal Kidney	kidney
4	chr4:81383800-81392000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr4:81383800-81392800	Weak transcription	Fetal Lung	lung
6	chr4:81384000-81391400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:81384000-81393000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:81384800-81392800	Weak transcription	Osteobl	bone
9	chr4:81386200-81387000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr4:81386400-81387200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr4:81386600-81387000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr4:81386600-81387000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr4:81386600-81388000	Enhancers	Ovary	ovary
14	chr4:81386600-81388000	Enhancers	Rectal Smooth Muscle	rectum
15	chr4:81386600-81388200	Enhancers	Colon Smooth Muscle	Colon
16	chr4:81386800-81387000	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr4:81386800-81392800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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