Variant report

Variant	rs10027362
Chromosome Location	chr4:81329451-81329452
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10031438	0.80[ASW][hapmap];0.86[MEX][hapmap]
rs1027397	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1039052	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1039053	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10857164	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12501575	0.83[AMR][1000 genomes]
rs1390253	0.86[ASN][1000 genomes]
rs1390255	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2867736	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34738400	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6814695	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6821990	0.83[AMR][1000 genomes]
rs7656243	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7678123	0.87[EUR][1000 genomes]
rs7683819	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7693928	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999334	chr4:81324288-81409040	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv537153	chr4:81324288-81409040	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10027362	ELF5	trans	cerebellum	SCAN
rs10027362	TNFRSF4	trans	cerebellum	SCAN
rs10027362	MRPS18C	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81328800-81334800	Weak transcription	Osteobl	bone
2	chr4:81329400-81330600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links