Variant report

Variant	rs10857164
Chromosome Location	chr4:81380543-81380544
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:62272636..62275100-chr4:81380067..81382892,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10027362	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1027397	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1039052	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1039053	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1390252	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1390253	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1390255	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2867736	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34738400	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58593245	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6814695	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7656243	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7678123	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7683819	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7693928	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999334	chr4:81324288-81409040	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv537153	chr4:81324288-81409040	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81361600-81381000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:81376200-81380800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:81376200-81380800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:81376200-81381400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:81376200-81386400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:81376400-81380800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:81376400-81380800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr4:81376400-81381200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr4:81376400-81382200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:81376400-81382200	Weak transcription	Placenta	Placenta
11	chr4:81376600-81380600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:81376600-81380800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr4:81376600-81380800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr4:81376600-81381000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr4:81378000-81382000	Weak transcription	NHEK	skin
16	chr4:81378000-81382200	Weak transcription	HMEC	breast
17	chr4:81378000-81382600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:81378200-81382200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr4:81378800-81380600	Enhancers	Adipose Nuclei	Adipose
20	chr4:81380400-81382400	Enhancers	H1 Cell Line	embryonic stem cell

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