Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:81384214..81388026-chr4:81394205..81396994,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10027362	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1027397	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1039052	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1039053	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10857164	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390252	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1390253	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1390255	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2867736	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34738400	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58593245	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6814695	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7656243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7678123	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7683819	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999334	chr4:81324288-81409040	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv537153	chr4:81324288-81409040	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81376200-81386400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:81381400-81389200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:81382400-81385600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:81382800-81392400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr4:81383400-81386400	Weak transcription	HMEC	breast
6	chr4:81383400-81392000	Weak transcription	Fetal Kidney	kidney
7	chr4:81383800-81386400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:81383800-81392000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr4:81383800-81392800	Weak transcription	Fetal Lung	lung
10	chr4:81384000-81386400	Weak transcription	NHEK	skin
11	chr4:81384000-81391400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr4:81384000-81393000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:81384200-81385600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr4:81384200-81386400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr4:81384200-81386600	Weak transcription	Colon Smooth Muscle	Colon
16	chr4:81384200-81386800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr4:81384800-81385600	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr4:81384800-81392800	Weak transcription	Osteobl	bone
19	chr4:81385000-81386600	Weak transcription	Ovary	ovary
20	chr4:81385400-81385600	Enhancers	Rectal Smooth Muscle	rectum

Quick Search: