Variant report

Variant	rs6814695
Chromosome Location	chr4:81381774-81381775
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:62272636..62275100-chr4:81380067..81382892,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10027362	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1027397	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1039052	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1039053	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10857164	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390252	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1390253	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1390255	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2867736	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34738400	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58593245	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7656243	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7678123	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7683819	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7693928	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999334	chr4:81324288-81409040	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv537153	chr4:81324288-81409040	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81376200-81386400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:81376400-81382200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:81376400-81382200	Weak transcription	Placenta	Placenta
4	chr4:81378000-81382000	Weak transcription	NHEK	skin
5	chr4:81378000-81382200	Weak transcription	HMEC	breast
6	chr4:81378000-81382600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:81378200-81382200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:81380400-81382400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr4:81380600-81381800	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr4:81380600-81383800	Weak transcription	Adipose Nuclei	Adipose
11	chr4:81380800-81382400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr4:81380800-81382600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr4:81380800-81382800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr4:81380800-81383000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr4:81380800-81383600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr4:81380800-81383800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr4:81381000-81381800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr4:81381000-81383800	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr4:81381200-81381800	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr4:81381200-81383800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr4:81381400-81381800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr4:81381400-81382200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr4:81381400-81383200	Enhancers	H9 Cell Line	embryonic stem cell
24	chr4:81381400-81389200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr4:81381600-81381800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr4:81381600-81381800	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr4:81381600-81383800	Weak transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links