Variant report

Variant	rs7927966
Chromosome Location	chr11:58376276-58376277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:58376227-58376317	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:58363991..58370346-chr11:58370564..58377152,10	K562	blood:

Variant related genes	Relation type
ZFP91-CNTF	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10896787	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10896788	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10896794	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10896795	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896796	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11229505	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11229512	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11229519	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11229543	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229545	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11229555	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11601687	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11603890	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11605269	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605297	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11605683	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12787765	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12799215	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12800710	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12808544	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17567523	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1938598	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2275993	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2276153	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2298608	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3168135	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7102510	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102852	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110210	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7925560	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8373	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58347600-58379600	Weak transcription	Pancreas	Pancrea
2	chr11:58347600-58379800	Weak transcription	Lung	lung
3	chr11:58347600-58380200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:58347800-58377200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr11:58347800-58380200	Weak transcription	Aorta	Aorta
6	chr11:58348200-58377400	Weak transcription	Fetal Kidney	kidney
7	chr11:58349200-58377400	Weak transcription	HSMMtube	muscle
8	chr11:58349200-58379600	Weak transcription	Spleen	Spleen
9	chr11:58349200-58380600	Weak transcription	Fetal Brain Male	brain
10	chr11:58349200-58384200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:58349200-58384800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:58351200-58378200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr11:58352600-58379600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:58354600-58377400	Weak transcription	Fetal Brain Female	brain
15	chr11:58354800-58376800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:58355000-58377200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:58355000-58377200	Weak transcription	NH-A	brain
18	chr11:58357200-58377200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:58360400-58377200	Weak transcription	Osteobl	bone
20	chr11:58360400-58379600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr11:58360600-58377200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:58360600-58378200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:58360600-58379000	Weak transcription	Fetal Muscle Leg	muscle
24	chr11:58360600-58379600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr11:58360600-58379600	Weak transcription	Fetal Stomach	stomach
26	chr11:58360600-58380200	Weak transcription	Esophagus	oesophagus
27	chr11:58360800-58377200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr11:58360800-58377200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr11:58360800-58377200	Weak transcription	Placenta	Placenta
30	chr11:58360800-58377400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr11:58360800-58378400	Weak transcription	Fetal Lung	lung
32	chr11:58360800-58379200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:58361000-58377200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr11:58361200-58377400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr11:58361400-58377400	Weak transcription	Adipose Nuclei	Adipose
36	chr11:58361600-58377400	Weak transcription	HMEC	breast
37	chr11:58361600-58378600	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr11:58361800-58378800	Weak transcription	Brain Cingulate Gyrus	brain
39	chr11:58362000-58377400	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr11:58362200-58377400	Weak transcription	Rectal Smooth Muscle	rectum
41	chr11:58362600-58379600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr11:58363000-58393200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr11:58363400-58379800	Weak transcription	Brain Germinal Matrix	brain
44	chr11:58364400-58377200	Weak transcription	NHLF	lung
45	chr11:58364600-58377200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr11:58364800-58377200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr11:58365400-58377200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr11:58365400-58377200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr11:58366200-58376800	Weak transcription	Dnd41	blood
50	chr11:58366200-58377200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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