Variant report

Variant	rs8373
Chromosome Location	chr11:58378424-58378425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10896785	0.81[AMR][1000 genomes]
rs10896787	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10896788	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10896794	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10896795	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896796	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11229463	0.84[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs11229505	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11229512	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11229519	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11229543	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229545	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11229555	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11601687	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11603890	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11605269	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605297	0.91[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11605683	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285111	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs12787765	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12799215	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12800710	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.85[MEX][hapmap];0.81[MKK][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12808544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17567523	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1893902	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs1938598	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1986404	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2275993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2276153	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2298608	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3168135	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6591475	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs7102510	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102852	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110210	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7925560	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7927966	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs8373	MS4A10	cis	cerebellum	SCAN
rs8373	OR4C6	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58347600-58379600	Weak transcription	Pancreas	Pancrea
2	chr11:58347600-58379800	Weak transcription	Lung	lung
3	chr11:58347600-58380200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:58347800-58380200	Weak transcription	Aorta	Aorta
5	chr11:58349200-58379600	Weak transcription	Spleen	Spleen
6	chr11:58349200-58380600	Weak transcription	Fetal Brain Male	brain
7	chr11:58349200-58384200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:58349200-58384800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:58352600-58379600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:58360400-58379600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:58360600-58379000	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:58360600-58379600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:58360600-58379600	Weak transcription	Fetal Stomach	stomach
14	chr11:58360600-58380200	Weak transcription	Esophagus	oesophagus
15	chr11:58360800-58379200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:58361600-58378600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr11:58361800-58378800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:58362600-58379600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:58363000-58393200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr11:58363400-58379800	Weak transcription	Brain Germinal Matrix	brain
21	chr11:58366200-58379800	Weak transcription	Fetal Heart	heart
22	chr11:58368600-58380400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr11:58368800-58378600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr11:58369000-58379600	Weak transcription	Brain Angular Gyrus	brain
25	chr11:58369000-58379600	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr11:58371200-58379000	Weak transcription	Psoas Muscle	Psoas
27	chr11:58371200-58379600	Weak transcription	Left Ventricle	heart
28	chr11:58371400-58379000	Weak transcription	Right Ventricle	heart
29	chr11:58372000-58384200	Weak transcription	Gastric	stomach
30	chr11:58372400-58379600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr11:58372400-58380000	Weak transcription	Small Intestine	intestine
32	chr11:58373200-58380200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr11:58374600-58380200	Weak transcription	Stomach Mucosa	stomach
34	chr11:58375800-58388200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr11:58376200-58384400	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr11:58376600-58388400	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr11:58376600-58391800	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr11:58376600-58395800	Strong transcription	Fetal Thymus	thymus
39	chr11:58376600-58396200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:58376800-58388200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr11:58376800-58391600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr11:58376800-58393200	Strong transcription	Primary B cells from peripheral blood	blood
43	chr11:58376800-58395200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr11:58376800-58395600	Strong transcription	Dnd41	blood
45	chr11:58377000-58391400	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr11:58377000-58391600	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr11:58377000-58394600	Strong transcription	K562	blood
48	chr11:58377200-58382000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr11:58377200-58382600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:58377200-58382800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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