Variant report

Variant	rs10896795
Chromosome Location	chr11:58366561-58366562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:58365320..58370346-chr11:58370768..58375026,4	K562	blood:
2	chr11:58363991..58370346-chr11:58370564..58377152,10	K562	blood:
3	chr11:58364615..58367572-chr11:58387277..58389399,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10896785	0.81[AMR][1000 genomes]
rs10896787	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10896788	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10896794	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10896796	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11229409	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs11229410	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11229411	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11229412	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11229413	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11229463	0.84[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap]
rs11229505	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11229512	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11229519	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11229543	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229545	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11229555	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11601687	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11603890	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11605269	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605297	0.91[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11605683	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12279895	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs12280114	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs12285111	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs12787765	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12799215	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12800710	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.85[MEX][hapmap];0.81[MKK][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12808544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17567523	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1893902	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs1938598	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1986404	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2275993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2276153	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2298608	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3168135	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6591475	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs7102510	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102852	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110210	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7925560	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7927966	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8373	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10896795	OR4C6	cis	cerebellum	SCAN
rs10896795	MS4A10	cis	cerebellum	SCAN

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58347600-58379600	Weak transcription	Pancreas	Pancrea
2	chr11:58347600-58379800	Weak transcription	Lung	lung
3	chr11:58347600-58380200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:58347800-58377200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr11:58347800-58380200	Weak transcription	Aorta	Aorta
6	chr11:58348200-58377400	Weak transcription	Fetal Kidney	kidney
7	chr11:58349200-58377400	Weak transcription	HSMMtube	muscle
8	chr11:58349200-58379600	Weak transcription	Spleen	Spleen
9	chr11:58349200-58380600	Weak transcription	Fetal Brain Male	brain
10	chr11:58349200-58384200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:58349200-58384800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:58349400-58367600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:58349600-58368200	Weak transcription	Brain Anterior Caudate	brain
14	chr11:58351000-58367800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr11:58351200-58378200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr11:58352000-58368400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:58352600-58379600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:58353400-58367600	Weak transcription	Hela-S3	cervix
19	chr11:58354600-58377400	Weak transcription	Fetal Brain Female	brain
20	chr11:58354800-58376800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:58355000-58366800	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr11:58355000-58367000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr11:58355000-58377200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:58355000-58377200	Weak transcription	NH-A	brain
25	chr11:58355600-58368000	Weak transcription	Brain Angular Gyrus	brain
26	chr11:58357200-58377200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:58360400-58367200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:58360400-58370200	Weak transcription	NHEK	skin
29	chr11:58360400-58377200	Weak transcription	Osteobl	bone
30	chr11:58360400-58379600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr11:58360600-58370200	Weak transcription	Right Ventricle	heart
32	chr11:58360600-58370800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr11:58360600-58372600	Weak transcription	HUVEC	blood vessel
34	chr11:58360600-58377200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:58360600-58378200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:58360600-58379000	Weak transcription	Fetal Muscle Leg	muscle
37	chr11:58360600-58379600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr11:58360600-58379600	Weak transcription	Fetal Stomach	stomach
39	chr11:58360600-58380200	Weak transcription	Esophagus	oesophagus
40	chr11:58360800-58367400	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr11:58360800-58368200	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr11:58360800-58377200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr11:58360800-58377200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr11:58360800-58377200	Weak transcription	Placenta	Placenta
45	chr11:58360800-58377400	Weak transcription	Stomach Smooth Muscle	stomach
46	chr11:58360800-58378400	Weak transcription	Fetal Lung	lung
47	chr11:58360800-58379200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:58361000-58377200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr11:58361200-58370000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:58361200-58377400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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