Variant report

Variant	rs7110210
Chromosome Location	chr11:58340484-58340485
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10896774	0.87[AMR][1000 genomes]
rs10896775	0.85[AMR][1000 genomes]
rs10896785	0.91[AMR][1000 genomes]
rs10896787	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10896788	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10896794	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10896795	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10896796	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11229423	0.83[AMR][1000 genomes]
rs11229505	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11229512	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11229519	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11229543	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11229545	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11229555	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11530830	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11601687	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603890	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11605269	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11605297	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11605683	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12269745	0.87[AMR][1000 genomes]
rs12274866	0.87[AMR][1000 genomes]
rs12283414	0.87[AMR][1000 genomes]
rs12285111	0.87[AMR][1000 genomes]
rs12286421	0.87[AMR][1000 genomes]
rs12289198	0.87[AMR][1000 genomes]
rs12290089	0.87[AMR][1000 genomes]
rs12291551	0.87[AMR][1000 genomes]
rs12294062	0.87[AMR][1000 genomes]
rs12786744	0.89[AMR][1000 genomes]
rs12787765	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12797488	0.89[AMR][1000 genomes]
rs12799215	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12800710	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12802819	0.87[AMR][1000 genomes]
rs12802960	0.87[AMR][1000 genomes]
rs12803648	0.83[AMR][1000 genomes]
rs12808544	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17474373	0.89[AMR][1000 genomes]
rs17567523	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1938598	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1986404	0.89[AMR][1000 genomes]
rs2275993	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2276153	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2298608	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3168135	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35279927	0.87[AMR][1000 genomes]
rs4347409	0.87[AMR][1000 genomes]
rs4506677	0.87[AMR][1000 genomes]
rs4517537	0.87[AMR][1000 genomes]
rs4519112	0.80[AMR][1000 genomes]
rs4579945	0.87[AMR][1000 genomes]
rs6591475	0.87[AMR][1000 genomes]
rs7102510	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7102852	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7925560	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7927966	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7931394	0.87[AMR][1000 genomes]
rs8373	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv528190	chr11:58336620-58347765	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58300000-58340600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:58318400-58341000	Weak transcription	Right Ventricle	heart
3	chr11:58318400-58344800	Weak transcription	Fetal Brain Male	brain
4	chr11:58318600-58344400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:58318800-58340600	Weak transcription	NHLF	lung
6	chr11:58318800-58341400	Weak transcription	Psoas Muscle	Psoas
7	chr11:58319200-58343000	Weak transcription	Fetal Brain Female	brain
8	chr11:58320000-58341000	Weak transcription	HSMMtube	muscle
9	chr11:58320200-58340800	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:58321800-58341200	Weak transcription	Colonic Mucosa	Colon
11	chr11:58321800-58345000	Weak transcription	Ovary	ovary
12	chr11:58322400-58344200	Weak transcription	Fetal Lung	lung
13	chr11:58329400-58341000	Weak transcription	Brain Angular Gyrus	brain
14	chr11:58329400-58342600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:58329400-58344400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:58330200-58343000	Weak transcription	Fetal Kidney	kidney
17	chr11:58330600-58345000	Weak transcription	Gastric	stomach
18	chr11:58331400-58341000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr11:58337000-58340600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:58337000-58341200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:58337200-58343800	Weak transcription	Fetal Muscle Leg	muscle
22	chr11:58337400-58340800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr11:58337400-58341000	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr11:58337600-58340800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:58337600-58341000	Weak transcription	Brain Anterior Caudate	brain
26	chr11:58337600-58341000	Weak transcription	Brain Substantia Nigra	brain
27	chr11:58337600-58341000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr11:58337600-58341000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr11:58337600-58341000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr11:58337600-58341200	Weak transcription	Adipose Nuclei	Adipose
31	chr11:58337600-58342600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:58337600-58343000	Weak transcription	Spleen	Spleen
33	chr11:58337600-58343200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr11:58337600-58343800	Weak transcription	Aorta	Aorta
35	chr11:58337600-58345000	Weak transcription	Lung	lung
36	chr11:58337800-58340600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:58337800-58343800	Weak transcription	Fetal Intestine Small	intestine
38	chr11:58338200-58340600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr11:58338200-58340600	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr11:58338200-58340800	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr11:58338200-58340800	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr11:58338200-58341000	Weak transcription	Brain Cingulate Gyrus	brain
43	chr11:58338200-58341000	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr11:58338200-58341000	Weak transcription	HSMM	muscle
45	chr11:58338200-58341200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr11:58338200-58343800	Weak transcription	Fetal Intestine Large	intestine
47	chr11:58338200-58344200	Weak transcription	Fetal Muscle Trunk	muscle
48	chr11:58338400-58341200	Weak transcription	Liver	Liver
49	chr11:58338800-58343600	Active TSS	GM12878-XiMat	blood
50	chr11:58338800-58344200	Weak transcription	Fetal Stomach	stomach

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