Variant report

Variant	rs10896785
Chromosome Location	chr11:58233395-58233396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10896774	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10896775	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10896787	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10896788	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10896794	0.82[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes]
rs10896795	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs10896796	0.81[AMR][1000 genomes]
rs11229409	0.90[CHB][hapmap]
rs11229410	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11229411	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11229412	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11229413	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11229423	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11229463	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11229505	0.82[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11229512	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11229519	0.82[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11229543	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs11229545	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs11229555	0.81[AMR][1000 genomes]
rs11530830	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11601687	0.91[AMR][1000 genomes]
rs11603890	0.81[AMR][1000 genomes]
rs11605269	0.91[AMR][1000 genomes]
rs11605297	0.82[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11605683	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes]
rs12269745	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12274866	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12279895	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12280114	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs12283414	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12285111	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12286421	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12289198	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12290089	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12291551	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12294062	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12786744	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12787765	0.81[AMR][1000 genomes]
rs12797488	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12799215	0.81[AMR][1000 genomes]
rs12800710	0.82[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12802819	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12802960	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12803648	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12808544	0.81[AMR][1000 genomes]
rs17474373	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17567523	0.91[AMR][1000 genomes]
rs1893902	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap]
rs1938598	0.81[AMR][1000 genomes]
rs1938637	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1986404	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2000486	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2275993	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs2276153	0.81[AMR][1000 genomes]
rs2298608	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs3168135	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs35279927	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4127353	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs4323891	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs4347409	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4506677	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4517537	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4519112	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4579945	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6591475	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7101864	0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs7102510	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs7102852	0.91[AMR][1000 genomes]
rs7110210	0.91[AMR][1000 genomes]
rs7925560	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7930778	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7931394	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8373	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv517849	chr11:58129053-58264181	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv1042491	chr11:58134936-58263639	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58233000-58233400	Enhancers	HMEC	breast
2	chr11:58233000-58233400	Enhancers	NHEK	skin
3	chr11:58233000-58233600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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