Variant report

Variant	rs7102510
Chromosome Location	chr11:58371283-58371284
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:58365320..58370346-chr11:58370768..58375026,4	K562	blood:
2	chr11:58363991..58370346-chr11:58370564..58377152,10	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10896785	0.81[AMR][1000 genomes]
rs10896787	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10896788	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10896794	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10896795	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896796	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11229463	0.84[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs11229505	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11229512	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11229519	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11229543	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229545	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11229555	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11601687	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11603890	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11605269	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605297	0.91[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11605683	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285111	0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs12787765	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12799215	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12800710	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.85[MEX][hapmap];0.81[MKK][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12808544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17567523	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1893902	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs1938598	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1986404	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2275993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2276153	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2298608	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3168135	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6591475	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs7102852	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110210	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7925560	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7927966	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8373	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7102510	OR4C6	cis	cerebellum	SCAN
rs7102510	MS4A10	cis	cerebellum	SCAN

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58347600-58379600	Weak transcription	Pancreas	Pancrea
2	chr11:58347600-58379800	Weak transcription	Lung	lung
3	chr11:58347600-58380200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:58347800-58377200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr11:58347800-58380200	Weak transcription	Aorta	Aorta
6	chr11:58348200-58377400	Weak transcription	Fetal Kidney	kidney
7	chr11:58349200-58377400	Weak transcription	HSMMtube	muscle
8	chr11:58349200-58379600	Weak transcription	Spleen	Spleen
9	chr11:58349200-58380600	Weak transcription	Fetal Brain Male	brain
10	chr11:58349200-58384200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:58349200-58384800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:58351200-58378200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr11:58352600-58379600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:58354600-58377400	Weak transcription	Fetal Brain Female	brain
15	chr11:58354800-58376800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:58355000-58377200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:58355000-58377200	Weak transcription	NH-A	brain
18	chr11:58357200-58377200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:58360400-58377200	Weak transcription	Osteobl	bone
20	chr11:58360400-58379600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr11:58360600-58372600	Weak transcription	HUVEC	blood vessel
22	chr11:58360600-58377200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:58360600-58378200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:58360600-58379000	Weak transcription	Fetal Muscle Leg	muscle
25	chr11:58360600-58379600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr11:58360600-58379600	Weak transcription	Fetal Stomach	stomach
27	chr11:58360600-58380200	Weak transcription	Esophagus	oesophagus
28	chr11:58360800-58377200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:58360800-58377200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr11:58360800-58377200	Weak transcription	Placenta	Placenta
31	chr11:58360800-58377400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr11:58360800-58378400	Weak transcription	Fetal Lung	lung
33	chr11:58360800-58379200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr11:58361000-58377200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr11:58361200-58377400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr11:58361400-58377400	Weak transcription	Adipose Nuclei	Adipose
37	chr11:58361600-58371800	Weak transcription	Gastric	stomach
38	chr11:58361600-58377400	Weak transcription	HMEC	breast
39	chr11:58361600-58378600	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr11:58361800-58378800	Weak transcription	Brain Cingulate Gyrus	brain
41	chr11:58362000-58377400	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr11:58362200-58372600	Weak transcription	A549	lung
43	chr11:58362200-58377400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr11:58362600-58379600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr11:58363000-58393200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr11:58363400-58379800	Weak transcription	Brain Germinal Matrix	brain
47	chr11:58363600-58371800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr11:58364400-58377200	Weak transcription	NHLF	lung
49	chr11:58364600-58377200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr11:58364800-58377200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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