Variant report

Variant	rs2275993
Chromosome Location	chr11:58379987-58379988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:58360339..58362577-chr11:58379617..58381821,2	K562	blood:
2	chr11:58372664..58374544-chr11:58379050..58381162,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10896785	0.81[AMR][1000 genomes]
rs10896787	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10896788	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10896794	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10896795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896796	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11229463	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11229505	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11229512	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11229519	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11229543	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229545	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11229555	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11601687	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11603890	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11605269	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605297	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11605683	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285111	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs12787765	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12799215	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12800710	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12808544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17567523	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1893902	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs1938598	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1986404	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs2276153	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2298608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3168135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6591475	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs7102510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102852	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110210	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7925560	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7927966	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58347600-58380200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:58347800-58380200	Weak transcription	Aorta	Aorta
3	chr11:58349200-58380600	Weak transcription	Fetal Brain Male	brain
4	chr11:58349200-58384200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:58349200-58384800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:58360600-58380200	Weak transcription	Esophagus	oesophagus
7	chr11:58363000-58393200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:58368600-58380400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:58372000-58384200	Weak transcription	Gastric	stomach
10	chr11:58372400-58380000	Weak transcription	Small Intestine	intestine
11	chr11:58373200-58380200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:58374600-58380200	Weak transcription	Stomach Mucosa	stomach
13	chr11:58375800-58388200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:58376200-58384400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr11:58376600-58388400	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr11:58376600-58391800	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr11:58376600-58395800	Strong transcription	Fetal Thymus	thymus
18	chr11:58376600-58396200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:58376800-58388200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr11:58376800-58391600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr11:58376800-58393200	Strong transcription	Primary B cells from peripheral blood	blood
22	chr11:58376800-58395200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr11:58376800-58395600	Strong transcription	Dnd41	blood
24	chr11:58377000-58391400	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr11:58377000-58391600	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr11:58377000-58394600	Strong transcription	K562	blood
27	chr11:58377200-58382000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:58377200-58382600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:58377200-58382800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr11:58377200-58383000	Strong transcription	NHLF	lung
31	chr11:58377200-58383200	Strong transcription	NHDF-Ad	bronchial
32	chr11:58377200-58383400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:58377200-58383400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr11:58377200-58383400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:58377200-58383600	Strong transcription	NH-A	brain
36	chr11:58377200-58383600	Strong transcription	Osteobl	bone
37	chr11:58377200-58383800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:58377200-58384800	Strong transcription	Placenta	Placenta
39	chr11:58377200-58387000	Strong transcription	Thymus	Thymus
40	chr11:58377200-58387200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr11:58377200-58388000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr11:58377200-58388600	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr11:58377200-58388800	Strong transcription	HUVEC	blood vessel
44	chr11:58377200-58389000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:58377200-58393000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr11:58377200-58393800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr11:58377200-58393800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr11:58377200-58394000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr11:58377200-58394000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:58377200-58394000	Strong transcription	Liver	Liver

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