Variant report

Variant	rs12787765
Chromosome Location	chr11:58400686-58400687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:58345996..58348302-chr11:58399595..58402081,2	MCF-7	breast:
2	chr11:58399679..58402149-chr11:58838160..58840024,2	K562	blood:
3	chr11:58397520..58400716-chr11:58402056..58406653,5	K562	blood:

Variant related genes	Relation type
ENSG00000186660	Chromatin interaction
ENSG00000255073	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10896785	0.81[AMR][1000 genomes]
rs10896787	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10896788	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10896794	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10896795	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10896796	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229505	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11229512	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11229519	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11229543	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11229545	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229555	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11601687	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11603890	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11605269	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11605297	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11605683	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12799215	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12800710	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12808544	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17567523	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1938598	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2275993	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2276153	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2298608	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3168135	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102510	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7102852	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7110210	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7925560	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7927966	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8373	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832168	chr11:58394060-58564651	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58392000-58406000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:58392200-58400800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:58392400-58402000	Weak transcription	Fetal Intestine Small	intestine
4	chr11:58393000-58407200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr11:58393200-58407000	Weak transcription	Thymus	Thymus
6	chr11:58393800-58401000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:58393800-58406200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:58393800-58407800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr11:58394000-58407200	Weak transcription	Left Ventricle	heart
10	chr11:58394000-58407800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr11:58394600-58401600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr11:58394600-58407200	Weak transcription	Primary T cells from cord blood	blood
13	chr11:58394600-58407200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr11:58394800-58400800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr11:58394800-58400800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr11:58394800-58400800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr11:58394800-58407000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr11:58394800-58408200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr11:58395200-58402000	Weak transcription	GM12878-XiMat	blood
20	chr11:58395200-58403600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:58395200-58407000	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr11:58395200-58407000	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr11:58395600-58407200	Weak transcription	Dnd41	blood
24	chr11:58395800-58407800	Weak transcription	Fetal Thymus	thymus
25	chr11:58396200-58407000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:58397400-58400800	Weak transcription	HSMM	muscle
27	chr11:58400000-58401000	Enhancers	Ovary	ovary
28	chr11:58400000-58403600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr11:58400000-58403600	Weak transcription	Pancreas	Pancrea
30	chr11:58400400-58400800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr11:58400600-58400800	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr11:58400600-58400800	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr11:58400600-58401000	Enhancers	H1 Cell Line	embryonic stem cell
34	chr11:58400600-58401200	Enhancers	HUES48 Cell Line	embryonic stem cell

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