Variant report

Variant	rs7945332
Chromosome Location	chr11:33188153-33188154
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr11:33187666-33188187	K562	blood:	n/a	chr11:33188154-33188170
2	RAD21	chr11:33187616-33188284	HCT-116	colon:	n/a	chr11:33187946-33187955 chr11:33187950-33187960 chr11:33187950-33187962
3	SMC3	chr11:33187703-33188206	Hela-S3	cervix:	n/a	chr11:33187946-33187960 chr11:33187950-33187960
4	RAD21	chr11:33187760-33188164	ECC-1	luminal epithelium:	n/a	chr11:33187946-33187955 chr11:33187950-33187960 chr11:33187950-33187962
5	RAD21	chr11:33187654-33188218	HepG2	liver:	n/a	chr11:33187946-33187955 chr11:33187950-33187960 chr11:33187950-33187962
6	RFX5	chr11:33187435-33188263	SK-N-SH	brain:	n/a	n/a
7	RAD21	chr11:33187776-33188161	GM12878	blood:	n/a	chr11:33187946-33187955 chr11:33187950-33187960 chr11:33187950-33187962
8	RAD21	chr11:33187779-33188164	HepG2	liver:	n/a	chr11:33187946-33187955 chr11:33187950-33187960 chr11:33187950-33187962
9	SMC3	chr11:33187756-33188195	GM12878	blood:	n/a	chr11:33187946-33187960 chr11:33187950-33187960
10	RAD21	chr11:33187744-33188172	SK-N-SH_RA	brain:	n/a	chr11:33187946-33187955 chr11:33187950-33187960 chr11:33187950-33187962
11	CTCF	chr11:33187620-33188157	IMR90	lung:	n/a	chr11:33187947-33187960 chr11:33187948-33187957
12	RAD21	chr11:33187770-33188156	IMR90	lung:	n/a	chr11:33187946-33187955 chr11:33187950-33187960 chr11:33187950-33187962
13	CTCF	chr11:33187705-33188295	HCT-116	colon:	n/a	chr11:33187947-33187960 chr11:33187948-33187957
14	SMC3	chr11:33187219-33188270	SK-N-SH	brain:	n/a	chr11:33187946-33187960 chr11:33187950-33187960
15	CTCF	chr11:33187743-33188154	GM12878	blood:	n/a	chr11:33187947-33187960 chr11:33187948-33187957
16	ARID3A	chr11:33187786-33188158	HepG2	liver:	n/a	n/a
17	CTCF	chr11:33188040-33188190	A549	lung:	n/a	n/a
18	RAD21	chr11:33187766-33188153	GM12878	blood:	n/a	chr11:33187946-33187955 chr11:33187950-33187960 chr11:33187950-33187962
19	RAD21	chr11:33187496-33188349	SK-N-SH	brain:	n/a	chr11:33187946-33187955 chr11:33187950-33187960 chr11:33187950-33187962
20	CTCF	chr11:33187699-33188255	HCT-116	colon:	n/a	chr11:33187947-33187960 chr11:33187948-33187957
21	CTCF	chr11:33187759-33188179	K562	blood:	n/a	chr11:33187947-33187960 chr11:33187948-33187957
22	CTCF	chr11:33187814-33188157	MCF-7	breast:	n/a	chr11:33187947-33187960 chr11:33187948-33187957
23	RAD21	chr11:33187560-33188324	HCT-116	colon:	n/a	chr11:33187946-33187955 chr11:33187950-33187960 chr11:33187950-33187962
24	RAD21	chr11:33187769-33188211	ECC-1	luminal epithelium:	n/a	chr11:33187946-33187955 chr11:33187950-33187960 chr11:33187950-33187962
25	RAD21	chr11:33187664-33188189	A549	lung:	n/a	chr11:33187946-33187955 chr11:33187950-33187960 chr11:33187950-33187962
26	RAD21	chr11:33187708-33188276	SK-N-SH_RA	brain:	n/a	chr11:33187946-33187955 chr11:33187950-33187960 chr11:33187950-33187962
27	RAD21	chr11:33187747-33188167	Hela-S3	cervix:	n/a	chr11:33187946-33187955 chr11:33187950-33187960 chr11:33187950-33187962
28	CTCF	chr11:33187492-33188293	SK-N-SH	brain:	n/a	chr11:33187947-33187960 chr11:33187948-33187957
29	RAD21	chr11:33187611-33188244	MCF-7	breast:	n/a	chr11:33187946-33187955 chr11:33187950-33187960 chr11:33187950-33187962
30	RAD21	chr11:33187721-33188234	A549	lung:	n/a	chr11:33187946-33187955 chr11:33187950-33187960 chr11:33187950-33187962
31	CTCF	chr11:33187478-33188436	A549	lung:	n/a	chr11:33187947-33187960 chr11:33187948-33187957

No.	Distal block	Cell Line	Cell type
1	chr11:33187528..33188393-chr11:33341292..33341979,2	K562	blood:
2	chr11:33187786..33191779-chr11:33278023..33282064,7	MCF-7	breast:
3	chr11:33187604..33188364-chr11:33351039..33351579,2	MCF-7	breast:
4	chr11:33188152..33190790-chr11:33192662..33194860,2	K562	blood:
5	chr11:33186751..33190322-chr11:33277127..33280323,4	K562	blood:
6	chr11:33187897..33188411-chr11:33708905..33709652,2	K562	blood:
7	chr11:33187826..33190557-chr11:33277163..33278825,2	MCF-7	breast:
8	chr11:33181583..33184572-chr11:33186402..33189745,3	K562	blood:
9	chr11:33187513..33188468-chr11:33351019..33351906,6	K562	blood:
10	chr11:33187260..33188477-chr11:33350825..33351973,13	MCF-7	breast:

Variant related genes	Relation type
CSTF3	TF binding region
ENSG00000206808	Chromatin interaction
ENSG00000247151	Chromatin interaction
ENSG00000110422	Chromatin interaction
ENSG00000176102	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1005934	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10767991	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10767996	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10768000	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10768002	0.81[EUR][1000 genomes]
rs10836023	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10836024	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10836033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10836037	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10836048	0.81[AFR][1000 genomes]
rs10836050	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs11032154	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11032156	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11032157	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11032158	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11032165	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11032166	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11032198	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11032202	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11032208	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11032210	0.83[EUR][1000 genomes]
rs12225045	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs12365009	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12418119	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs12420035	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1969748	0.81[EUR][1000 genomes]
rs2901036	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4382876	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4388862	0.85[CHB][hapmap];0.95[CHD][hapmap];0.84[JPT][hapmap]
rs61887100	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7104455	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7129162	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7933649	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9666522	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:37 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762904	chr11:32969258-33586535	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
2	nsv1041149	chr11:32981164-33496670	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv1053823	chr11:32981164-33533356	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	nsv897194	chr11:32993887-33471804	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	nsv1040572	chr11:33008191-33518964	Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
6	nsv540989	chr11:33008191-33518964	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
7	nsv1042860	chr11:33008191-33562490	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
8	nsv540990	chr11:33008191-33562490	Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
9	nsv533840	chr11:33008192-33595324	Bivalent Enhancer Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
10	nsv1051521	chr11:33008435-33239765	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
11	nsv540991	chr11:33008435-33239765	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
12	nsv1044478	chr11:33008435-33656273	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
13	nsv897195	chr11:33012493-33559186	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
14	nsv1053344	chr11:33028973-33499346	Bivalent Enhancer Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
15	nsv1046243	chr11:33043155-33439216	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
16	nsv540992	chr11:33043155-33439216	Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
17	nsv1050944	chr11:33043155-33656273	Flanking Active TSS Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
18	nsv540993	chr11:33043155-33656273	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
19	nsv529212	chr11:33053073-33641691	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
20	nsv869418	chr11:33053073-33662479	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
21	nsv467786	chr11:33065394-33476703	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
22	nsv553994	chr11:33065394-33476703	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
23	nsv521130	chr11:33068389-33602913	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
24	nsv1049756	chr11:33075082-33496670	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
25	nsv1053959	chr11:33075082-33565833	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
26	nsv540994	chr11:33075082-33565833	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
27	esv2761660	chr11:33114936-33486928	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
28	nsv1035618	chr11:33117833-33448457	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
29	nsv540995	chr11:33117833-33448457	Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
30	nsv1047667	chr11:33119875-33301210	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
31	nsv897200	chr11:33132864-33383085	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
32	nsv553995	chr11:33132864-33476703	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
33	nsv1038920	chr11:33142058-33482973	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
34	nsv897201	chr11:33154678-33370884	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
35	nsv1036238	chr11:33162914-33460303	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
36	nsv540996	chr11:33162914-33460303	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
37	nsv1037430	chr11:33183475-33341784	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7945332	APIP	cis	parietal	SCAN

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33183400-33189400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:33183400-33189800	Weak transcription	Small Intestine	intestine
3	chr11:33183600-33188200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:33183600-33189000	Weak transcription	Placenta	Placenta
5	chr11:33183600-33189800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr11:33183600-33190200	Weak transcription	Stomach Mucosa	stomach
7	chr11:33183600-33190200	Weak transcription	HSMMtube	muscle
8	chr11:33183600-33193600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:33183600-33199400	Weak transcription	Right Atrium	heart
10	chr11:33183600-33203400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:33183800-33188600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:33183800-33189400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:33183800-33189800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:33183800-33199000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:33184000-33189200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:33184800-33189600	Weak transcription	K562	blood
17	chr11:33185000-33189400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr11:33185000-33189600	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr11:33187200-33190800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:33187200-33190800	Enhancers	NHDF-Ad	bronchial
21	chr11:33187400-33188400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:33187400-33188600	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr11:33187400-33190800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:33187400-33190800	Enhancers	Osteobl	bone
25	chr11:33187600-33188200	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr11:33187600-33188200	Enhancers	A549	lung
27	chr11:33187600-33188200	Weak transcription	NHLF	lung
28	chr11:33187600-33188400	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr11:33187600-33188600	Enhancers	Fetal Muscle Leg	muscle
30	chr11:33187600-33189000	Enhancers	Muscle Satellite Cultured Cells	--
31	chr11:33187800-33188400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:33187800-33194600	Weak transcription	Adipose Nuclei	Adipose
33	chr11:33188000-33200400	Weak transcription	Dnd41	blood

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