Variant report

Variant	rs7948172
Chromosome Location	chr11:15980960-15980961
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10160737	0.87[ASN][1000 genomes]
rs10832532	0.81[ASN][1000 genomes]
rs10832533	0.87[ASN][1000 genomes]
rs10832536	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10832537	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11023787	0.81[ASN][1000 genomes]
rs11023789	0.81[ASN][1000 genomes]
rs11023790	0.87[ASN][1000 genomes]
rs11023791	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11023792	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11023794	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11023795	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11023798	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12226315	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12276616	0.86[ASN][1000 genomes]
rs7111730	0.86[ASN][1000 genomes]
rs965631	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15963000-15985800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:15972800-15989200	Weak transcription	Aorta	Aorta
3	chr11:15977400-15985600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:15977600-15985600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:15979600-15984400	Weak transcription	Right Atrium	heart
6	chr11:15980000-15981200	Enhancers	Fetal Lung	lung
7	chr11:15980800-15986400	Weak transcription	Right Ventricle	heart
8	chr11:15980800-15987200	Weak transcription	Fetal Heart	heart
9	chr11:15980800-15987400	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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