Variant report

Variant	rs11023790
Chromosome Location	chr11:15964946-15964947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10160737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10458876	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10832532	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10832533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832536	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10832537	0.88[ASN][1000 genomes]
rs11023779	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11023783	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11023787	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11023789	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11023791	0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11023792	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11023794	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11023795	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11023798	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12226315	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12276616	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12280756	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12293688	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16932318	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7111730	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7948172	0.87[ASN][1000 genomes]
rs965631	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15957800-15965200	Weak transcription	Colonic Mucosa	Colon
2	chr11:15959200-15965200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr11:15963000-15985800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:15963200-15966000	Weak transcription	Adipose Nuclei	Adipose

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