Variant report

Variant	rs10832532
Chromosome Location	chr11:15958717-15958718
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15957587..15959918-chr11:15968473..15970708,2	K562	blood:
2	chr11:15958570..15960255-chr11:15973846..15975701,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10160737	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10458876	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832529	0.89[CEU][hapmap]
rs10832533	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10832536	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10832537	0.81[ASN][1000 genomes]
rs11023773	0.88[CEU][hapmap]
rs11023779	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023783	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11023787	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023789	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023790	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11023791	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11023792	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11023794	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11023795	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11023798	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12226315	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12276616	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12280756	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12293688	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16932318	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7111730	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7948172	0.81[ASN][1000 genomes]
rs965631	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15955600-15958800	Weak transcription	Osteobl	bone
2	chr11:15956200-15959200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr11:15956400-15963000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:15957400-15959000	Weak transcription	Fetal Lung	lung
5	chr11:15957600-15959000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:15957800-15965200	Weak transcription	Colonic Mucosa	Colon
7	chr11:15958200-15959000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr11:15958400-15959400	Enhancers	Rectal Smooth Muscle	rectum
9	chr11:15958400-15960400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:15958600-15959000	Enhancers	Colon Smooth Muscle	Colon
11	chr11:15958600-15959200	Enhancers	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links