Variant report

Variant	rs10458876
Chromosome Location	chr11:15939080-15939081
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15905811..15907638-chr11:15937488..15939318,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10160737	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10832529	0.89[CEU][hapmap]
rs10832532	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832533	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10832536	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11023773	0.88[CEU][hapmap]
rs11023779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023783	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023787	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023789	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023790	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11023791	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11023792	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11023794	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11023795	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11023798	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12226315	0.84[ASN][1000 genomes]
rs12276616	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12280756	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12293688	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16932318	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7111730	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs965631	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv818799	chr11:15930472-15946803	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15928600-15941800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:15934600-15939800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:15934600-15941000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:15935600-15942000	Weak transcription	Left Ventricle	heart
5	chr11:15935800-15940200	Weak transcription	Fetal Heart	heart
6	chr11:15936000-15942000	Weak transcription	Right Atrium	heart
7	chr11:15939000-15940000	Enhancers	Fetal Intestine Large	intestine

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