Variant report

Variant	rs11023787
Chromosome Location	chr11:15952294-15952295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15948350..15949908-chr11:15950481..15953275,2	K562	blood:
2	chr11:15951824..15953776-chr11:16367322..16370223,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10160737	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10458876	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832529	0.89[CEU][hapmap]
rs10832532	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832533	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10832536	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10832537	0.81[ASN][1000 genomes]
rs11023773	0.88[CEU][hapmap]
rs11023779	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023783	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11023789	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023790	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11023791	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11023792	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11023794	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11023795	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11023798	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12226315	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12276616	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12280756	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12293302	1.00[ASW][hapmap]
rs12293688	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16932318	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7111730	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7948172	0.81[ASN][1000 genomes]
rs965631	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Bone mineral density (wrist)	21104366	GWAS catalog

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15948200-15955600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:15950400-15953400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr11:15952200-15952600	Active TSS	Gastric	stomach

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