Variant report

Variant	rs11023789
Chromosome Location	chr11:15956612-15956613
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10160737	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10458876	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832529	0.85[CEU][hapmap]
rs10832532	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832533	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10832536	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10832537	0.81[ASN][1000 genomes]
rs11023773	0.85[CEU][hapmap]
rs11023779	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023783	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11023787	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023790	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11023791	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11023792	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11023794	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11023795	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11023798	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12226315	0.87[ASN][1000 genomes]
rs12276616	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12280756	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12293688	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16932318	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7111730	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7948172	0.81[ASN][1000 genomes]
rs965631	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15955000-15957800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr11:15955000-15958200	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr11:15955200-15957600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:15955200-15958000	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr11:15955600-15958800	Weak transcription	Osteobl	bone
6	chr11:15956200-15957400	Enhancers	Fetal Lung	lung
7	chr11:15956200-15957600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:15956200-15957800	Enhancers	Colonic Mucosa	Colon
9	chr11:15956200-15959200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:15956400-15957400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:15956400-15963000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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