Variant report

Variant	rs12276616
Chromosome Location	chr11:15966587-15966588
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10160737	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10458876	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10832532	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10832533	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832536	0.96[ASN][1000 genomes]
rs10832537	0.87[ASN][1000 genomes]
rs11023779	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11023783	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11023787	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11023789	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11023790	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023791	1.00[ASN][1000 genomes]
rs11023792	0.96[ASN][1000 genomes]
rs11023794	0.96[ASN][1000 genomes]
rs11023795	0.96[ASN][1000 genomes]
rs11023798	0.96[ASN][1000 genomes]
rs12226315	0.96[ASN][1000 genomes]
rs12280756	0.90[EUR][1000 genomes]
rs12293688	0.90[EUR][1000 genomes]
rs16932318	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7111730	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948172	0.86[ASN][1000 genomes]
rs965631	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15963000-15985800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:15965200-15966600	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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