Variant report

Variant	rs12293688
Chromosome Location	chr11:15928404-15928405
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SUZ12	chr11:15928400-15929325	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15927726..15929606-chr11:15934881..15937502,2	K562	blood:

Variant related genes	Relation type
ENSG00000254661	TF binding region

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10160737	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10458876	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10832532	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10832533	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10832536	0.81[AMR][1000 genomes]
rs11023779	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11023783	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11023787	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11023789	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11023790	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11023792	0.81[AMR][1000 genomes]
rs11023794	0.81[AMR][1000 genomes]
rs11023798	0.81[AMR][1000 genomes]
rs12276616	0.90[EUR][1000 genomes]
rs12280756	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16932318	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7111730	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3440414	chr11:15926376-15931274	Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv3404867	chr11:15927276-15930374	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3397784	chr11:15927276-15930474	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3373874	chr11:15927926-15930724	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15915000-15929200	Weak transcription	Esophagus	oesophagus
2	chr11:15919800-15934400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:15923600-15931600	Weak transcription	Fetal Heart	heart
4	chr11:15923600-15933200	Weak transcription	Right Atrium	heart
5	chr11:15923800-15933200	Weak transcription	Right Ventricle	heart
6	chr11:15924000-15932000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:15925200-15928600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:15927200-15929000	Active TSS	Spleen	Spleen
9	chr11:15927400-15928800	Weak transcription	Gastric	stomach
10	chr11:15927800-15928600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:15927800-15928600	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr11:15928000-15933200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr11:15928400-15928600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:15928400-15928600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:15928400-15928600	Enhancers	Fetal Kidney	kidney
16	chr11:15928400-15928600	Enhancers	Lung	lung
17	chr11:15928400-15929000	Genic enhancers	Pancreas	Pancrea
18	chr11:15928400-15931800	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr11:15928400-15932000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr11:15928400-15933200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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